A haplotyping object created by run_haplotyping() for example cqProt-003 soy data
Format
A haplotype (S3) object containing results needed for haplotype visualization across five epsilon values (0.2,0.4,0.6,0.8,1)
- epsilon
Epsilon value chosen for haplotyping with DBSCAN
- MGmin
MGmin value (minPts) chosen for haplotyping with DBSCAN
- Hapfile
Summary of Marker Groups defining haplotype combinations
- Indfile
Haplotype assignments for individuals
- Varfile
Marker Group assignments for SNPs, with additional calculated information